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Beta2-microglobulin from Gallus gallus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BEW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 22%(w/v) PEG 3350, 200mM Mg2Cl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.88 34.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.92 α = 90 b = 30.48 β = 93.47 c = 87.36 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2010-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 36.85 96 0.088 12.5 3.6 13485 12952 18.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 92.2 0.193 6.8 3.5 1671
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3BEW 2 36.85 13485 12672 667 100 0.19723 0.19493 0.1963 0.24189 0.2425 RANDOM 18.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 1.37 -0.7 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.579 r_dihedral_angle_3_deg 11.948 r_dihedral_angle_4_deg 7.1 r_dihedral_angle_1_deg 6.251 r_scangle_it 2.564 r_scbond_it 1.616 r_angle_refined_deg 1.271 r_mcangle_it 1.087 r_mcbond_it 0.577 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.579 r_dihedral_angle_3_deg 11.948 r_dihedral_angle_4_deg 7.1 r_dihedral_angle_1_deg 6.251 r_scangle_it 2.564 r_scbond_it 1.616 r_angle_refined_deg 1.271 r_mcangle_it 1.087 r_mcbond_it 0.577 r_chiral_restr 0.089 r_bond_refined_d 0.011 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1526 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling