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Fk1 domain mutant A19T of FKBP51, crystal form II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5P PDB entry 3O5P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 32 % PEG3350, 0.05 M NH4OAc, 0.1 M BisTrisHCl, pH 6.5, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.774 α = 90 b = 48.774 β = 90 c = 179.986 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9794 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 59.995 96.7 0.076 0.076 13.2 4.7 32766 17.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 96.1 0.395 0.395 1.9 4.6 4671
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3O5P 1.6 20 32670 1660 96.39 0.2021 0.2003 0.2364 0.2429 RANDOM 18.6779
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 0.08 0.16 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_3_deg 11.672 r_dihedral_angle_4_deg 11.582 r_dihedral_angle_1_deg 7.059 r_scangle_it 3.209 r_scbond_it 2.255 r_angle_refined_deg 1.468 r_mcangle_it 1.169 r_mcbond_it 0.788 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_3_deg 11.672 r_dihedral_angle_4_deg 11.582 r_dihedral_angle_1_deg 7.059 r_scangle_it 3.209 r_scbond_it 2.255 r_angle_refined_deg 1.468 r_mcangle_it 1.169 r_mcbond_it 0.788 r_nbtor_refined 0.307 r_nbd_refined 0.199 r_symmetry_hbond_refined 0.159 r_symmetry_vdw_refined 0.13 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1931 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 6
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction