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Crystal structure of a fragment of FKBP51 comprising the Fk1 and Fk2 domains
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q1C PDB entry 1Q1C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 0.2M (NH4)3-citrate, 20% PEG3350, pH 7.0, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.1 60.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.73 α = 90 b = 113.73 β = 90 c = 112.126 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2006-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.000 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4 80.42 99.6 0.177 0.177 6.4 3.4 6065 6065
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4 4.22 99.8 0.71 0.71 1.1 3.4 881
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1Q1C 4 20 6023 275 99.65 0.3187 0.3174 0.3057 0.3438 0.346 RANDOM 164.8201
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.22 9.22 -18.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.512 r_dihedral_angle_3_deg 14.213 r_dihedral_angle_4_deg 12.261 r_dihedral_angle_1_deg 4.658 r_angle_refined_deg 0.815 r_nbtor_refined 0.296 r_scangle_it 0.255 r_symmetry_vdw_refined 0.205 r_symmetry_hbond_refined 0.166 r_nbd_refined 0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.512 r_dihedral_angle_3_deg 14.213 r_dihedral_angle_4_deg 12.261 r_dihedral_angle_1_deg 4.658 r_angle_refined_deg 0.815 r_nbtor_refined 0.296 r_scangle_it 0.255 r_symmetry_vdw_refined 0.205 r_symmetry_hbond_refined 0.166 r_nbd_refined 0.164 r_scbond_it 0.143 r_mcangle_it 0.14 r_xyhbond_nbd_refined 0.127 r_mcbond_it 0.077 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3742 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction