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Crystal Structure of Human Dehydrogenase/Reductase (SDR family) member 4 (DHRS4)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZAT PDB ENTRY 2ZAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 277 0.1M KSCN30% mPEG 2K, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.4 48.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.07 α = 90 b = 132.2 β = 90 c = 133.796 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR225 2010-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.29 99.1 0.07 0.07 10.4 4.8 116449
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.79 99.9 1.7 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2ZAT 1.7 29.29 110448 110448 5829 98.6 0.212 0.21 0.2297 0.25 0.27 RANDOM 25.85
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.8 4.56 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.546 r_dihedral_angle_4_deg 20.308 r_dihedral_angle_3_deg 12.247 r_dihedral_angle_1_deg 5.549 r_scangle_it 5.114 r_scbond_it 3.554 r_mcangle_it 2.838 r_mcbond_it 1.918 r_angle_refined_deg 1.372 r_mcbond_other 0.931
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.546 r_dihedral_angle_4_deg 20.308 r_dihedral_angle_3_deg 12.247 r_dihedral_angle_1_deg 5.549 r_scangle_it 5.114 r_scbond_it 3.554 r_mcangle_it 2.838 r_mcbond_it 1.918 r_angle_refined_deg 1.372 r_mcbond_other 0.931 r_angle_other_deg 0.906 r_chiral_restr 0.068 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7416 Nucleic Acid Atoms Solvent Atoms 606 Heterogen Atoms 235
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling