3O3T

Crystal Structure Analysis of M32A mutant of human CLIC1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529320% (w/v) PEG 3350, 0.1M Tris-HCl, 0.2M sodium acetate pH 7.5, 0.02% azide, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1342.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.36α = 90
b = 63.985β = 90
c = 82.803γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113CCDBruker Platinum 135Mirrors2009-10-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6950.6398.590.148166.3195.2425911
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.591.6470.657

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.750.6325462129399.990.23130.22920.271RANDOM17.4453
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.490.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.335
r_dihedral_angle_4_deg13.648
r_dihedral_angle_3_deg13.318
r_dihedral_angle_1_deg6.311
r_scangle_it3.594
r_scbond_it2.232
r_angle_refined_deg2.028
r_mcangle_it0.809
r_mcbond_it0.335
r_chiral_restr0.137
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.335
r_dihedral_angle_4_deg13.648
r_dihedral_angle_3_deg13.318
r_dihedral_angle_1_deg6.311
r_scangle_it3.594
r_scbond_it2.232
r_angle_refined_deg2.028
r_mcangle_it0.809
r_mcbond_it0.335
r_chiral_restr0.137
r_bond_refined_d0.025
r_gen_planes_refined0.013
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1851
Nucleic Acid Atoms
Solvent Atoms150
Heterogen Atoms

Software

Software
Software NamePurpose
SAINTdata scaling
PHASERphasing
DMphasing
REFMACrefinement
PDB_EXTRACTdata extraction
SAINTdata reduction