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Crystal Structure of an Inactive Kemp Elimination Design HG-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 0.8 M potassium-sodium tartrate, 0.1 M Tris, 0.05% PEG-MME 5000, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.98 37.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.288 α = 90 b = 72.452 β = 90 c = 74.636 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Mirrors 2007-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 74.633 99.2 0.025 0.025 30.7 2.7 18096 18096
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 98.2 0.044 0.044 13.9 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 35.38 17130 921 98.75 0.17047 0.16737 0.1674 0.22932 0.2272 RANDOM 17.455
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 -0.19 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.437 r_dihedral_angle_4_deg 16.118 r_dihedral_angle_3_deg 13.744 r_dihedral_angle_1_deg 6.61 r_scangle_it 4.605 r_scbond_it 3.039 r_angle_refined_deg 1.802 r_mcangle_it 1.587 r_mcbond_it 0.996 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.437 r_dihedral_angle_4_deg 16.118 r_dihedral_angle_3_deg 13.744 r_dihedral_angle_1_deg 6.61 r_scangle_it 4.605 r_scbond_it 3.039 r_angle_refined_deg 1.802 r_mcangle_it 1.587 r_mcbond_it 0.996 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.269 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.128 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2326 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction CrystalClear data scaling