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Electron transfer complexes:experimental mapping of the Redox-dependent Cytochrome C electrostatic surface
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HRC PDB entry 1HRC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 300 Excess of NaNO3 and 10% of Ditionite, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.17 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.092 α = 90 b = 52.029 β = 123.07 c = 77.749 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 65.09 21667
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1HRC 1.9 65.09 21667 1166 95.25 0.19712 0.19285 0.193 0.27616 0.2746 RANDOM 14.267
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 1.36 -1.31 2.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.061 r_dihedral_angle_4_deg 26.403 r_dihedral_angle_3_deg 16.915 r_dihedral_angle_1_deg 6.279 r_scangle_it 3.302 r_scbond_it 2.379 r_angle_refined_deg 1.794 r_mcangle_it 1.471 r_mcbond_it 1.085 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.061 r_dihedral_angle_4_deg 26.403 r_dihedral_angle_3_deg 16.915 r_dihedral_angle_1_deg 6.279 r_scangle_it 3.302 r_scbond_it 2.379 r_angle_refined_deg 1.794 r_mcangle_it 1.471 r_mcbond_it 1.085 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.268 r_symmetry_vdw_refined 0.247 r_xyhbond_nbd_refined 0.215 r_nbd_refined 0.207 r_chiral_restr 0.099 r_bond_refined_d 0.02 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2478 Nucleic Acid Atoms Solvent Atoms 365 Heterogen Atoms 201
Software Software Software Name Purpose AMoRE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling