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PDE4B In complex with ligand an2898
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop vapor diffusion 7.4 298 MgCl2, pH 7.4, hanging drop vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.26 45.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.611 α = 90 b = 53.611 β = 90 c = 229.014 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PILATUS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.918 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 57.26 98.3 0.058 11.6 25477 25081
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.03 85.1 0.383 4.7 2396
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.95 57.26 23826 1254 98.48 0.1867 0.1841 0.1901 0.2365 0.2349 RANDOM 35.2541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.63 1.63 -3.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.613 r_dihedral_angle_4_deg 14.151 r_dihedral_angle_3_deg 12.777 r_scangle_it 5.691 r_dihedral_angle_1_deg 4.949 r_scbond_it 4.383 r_mcangle_it 2.715 r_mcbond_it 2.234 r_angle_refined_deg 1.065 r_angle_other_deg 0.751
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.613 r_dihedral_angle_4_deg 14.151 r_dihedral_angle_3_deg 12.777 r_scangle_it 5.691 r_dihedral_angle_1_deg 4.949 r_scbond_it 4.383 r_mcangle_it 2.715 r_mcbond_it 2.234 r_angle_refined_deg 1.065 r_angle_other_deg 0.751 r_mcbond_other 0.554 r_symmetry_vdw_other 0.243 r_nbd_refined 0.216 r_nbtor_refined 0.182 r_nbd_other 0.16 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.149 r_symmetry_vdw_refined 0.1 r_nbtor_other 0.081 r_metal_ion_refined 0.078 r_chiral_restr 0.065 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2615 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 79
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction