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Crystal Structure of Bovine Xanthine Oxidase in Complex with Quercetin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Sitting Batch 7.2 298 PEG 8000, pH 7.2, Sitting Batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.41 48.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.686 α = 90 b = 73.398 β = 97.13 c = 138.21 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm 2010-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 101.5 98.2 178392 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.052 98.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 101.5 175239 8835 98.23 0.194 0.1917 0.1945 0.2375 0.241 RANDOM 26.7408
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.67 -0.41 0.58 1.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.437 r_dihedral_angle_4_deg 17.684 r_dihedral_angle_3_deg 15.988 r_dihedral_angle_1_deg 6.327 r_scangle_it 3.63 r_scbond_it 2.366 r_angle_refined_deg 1.554 r_mcangle_it 1.426 r_mcbond_it 0.908 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.437 r_dihedral_angle_4_deg 17.684 r_dihedral_angle_3_deg 15.988 r_dihedral_angle_1_deg 6.327 r_scangle_it 3.63 r_scbond_it 2.366 r_angle_refined_deg 1.554 r_mcangle_it 1.426 r_mcbond_it 0.908 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.284 r_symmetry_hbond_refined 0.255 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.103 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19122 Nucleic Acid Atoms Solvent Atoms 1057 Heterogen Atoms 222
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling CCP4 phasing