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Bovine beta-lactoglobulin complex with capric acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY PDB ENTRY 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.34M trisodium citrate, 0.1M Tris-HCl buffer, 1mM capric acid in 96% ethanol , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.53 51.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.5 α = 90 b = 53.5 β = 90 c = 112.14 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD OXFORD TITAN CCD Atlas detector 135mm 2009-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 10 99.3 0.06 23.7 15155
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 2 100 0.394 3.4 2172
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BSY 1.9 9.96 14348 769 99.98 0.24082 0.23831 0.2371 0.2893 0.2893 RANDOM 29.629
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.535 r_dihedral_angle_4_deg 22.629 r_dihedral_angle_3_deg 19.794 r_dihedral_angle_1_deg 7.463 r_scangle_it 3.961 r_scbond_it 2.539 r_mcangle_it 2.047 r_angle_refined_deg 1.921 r_mcbond_it 1.256 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.535 r_dihedral_angle_4_deg 22.629 r_dihedral_angle_3_deg 19.794 r_dihedral_angle_1_deg 7.463 r_scangle_it 3.961 r_scbond_it 2.539 r_mcangle_it 2.047 r_angle_refined_deg 1.921 r_mcbond_it 1.256 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.283 r_nbd_refined 0.24 r_xyhbond_nbd_refined 0.194 r_symmetry_hbond_refined 0.149 r_chiral_restr 0.132 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1280 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 19
Software Software Software Name Purpose CrysalisPro data collection MOLREP phasing REFMAC refinement CrysalisPro data reduction SCALA data scaling