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Crystal structure of a Pfam DUF1093 family protein (BSU39620) from Bacillus subtilis at 2.15 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 3.200000000M (NH4)2SO4, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.54 65.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.535 α = 90 b = 91.535 β = 90 c = 59.13 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2010-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 29.962 100 0.112 6.1 15880 33.756
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.15 29.962 15878 791 99.99 0.181 0.179 0.18 0.217 0.2129 RANDOM 38.842
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -0.22 -0.44 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.313 r_dihedral_angle_4_deg 22.024 r_dihedral_angle_3_deg 13.633 r_dihedral_angle_1_deg 6.99 r_scangle_it 3.539 r_scbond_it 2.284 r_angle_refined_deg 1.537 r_mcangle_it 1.31 r_angle_other_deg 1.172 r_mcbond_it 0.701
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.313 r_dihedral_angle_4_deg 22.024 r_dihedral_angle_3_deg 13.633 r_dihedral_angle_1_deg 6.99 r_scangle_it 3.539 r_scbond_it 2.284 r_angle_refined_deg 1.537 r_mcangle_it 1.31 r_angle_other_deg 1.172 r_mcbond_it 0.701 r_mcbond_other 0.201 r_chiral_restr 0.095 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1392 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction