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Crystal structure of P38 alpha in complex with DP802
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 290 20% PEG 3350, 200MM LITIUM CITRATE, SOAKED WITH COMPOUND, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, pH 7.0
Crystal Properties Matthews coefficient Solvent content 3.05 59.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.551 α = 90 b = 85.956 β = 90 c = 126.584 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2007-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 37.88 93.5 0.079 10.3 6.1 38192 38192
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.89 1.96 65.8 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.89 37.88 38142 38142 1910 0.169 0.169 0.167 0.1708 0.213 0.2138 RANDOM 19.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.31 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.569 r_dihedral_angle_4_deg 21.711 r_dihedral_angle_3_deg 13.943 r_dihedral_angle_1_deg 6.191 r_scangle_it 3.381 r_scbond_it 2.367 r_mcangle_it 1.573 r_angle_refined_deg 1.553 r_mcbond_it 1.358 r_angle_other_deg 0.973
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.569 r_dihedral_angle_4_deg 21.711 r_dihedral_angle_3_deg 13.943 r_dihedral_angle_1_deg 6.191 r_scangle_it 3.381 r_scbond_it 2.367 r_mcangle_it 1.573 r_angle_refined_deg 1.553 r_mcbond_it 1.358 r_angle_other_deg 0.973 r_symmetry_vdw_other 0.254 r_mcbond_other 0.231 r_nbd_refined 0.217 r_nbd_other 0.205 r_symmetry_hbond_refined 0.197 r_xyhbond_nbd_refined 0.196 r_symmetry_vdw_refined 0.188 r_nbtor_refined 0.177 r_chiral_restr 0.088 r_nbtor_other 0.088 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2817 Nucleic Acid Atoms Solvent Atoms 578 Heterogen Atoms 31
Software Software Software Name Purpose StructureStudio data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling