3NMN

Crystal structure of pyrabactin-bound abscisic acid receptor PYL1 in complex with type 2C protein phosphatase ABI1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.52930.2M ammonium sulphate, 0.1M BisTris, 22% PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1943.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.978α = 115.78
b = 66.71β = 95.43
c = 72.598γ = 105.6
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.00APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1530920.09849.113.4502364628322

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3KDJ2.1529.625023646283361796.990.213010.21030.24751RANDOM40.935
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.28-1.47-2.380.111.22-0.57
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.28
r_dihedral_angle_4_deg20.253
r_dihedral_angle_3_deg15.062
r_sphericity_free14.877
r_sphericity_bonded5.583
r_scangle_it5.425
r_dihedral_angle_1_deg4.677
r_scbond_it3.638
r_mcangle_it3.306
r_rigid_bond_restr2.702
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.28
r_dihedral_angle_4_deg20.253
r_dihedral_angle_3_deg15.062
r_sphericity_free14.877
r_sphericity_bonded5.583
r_scangle_it5.425
r_dihedral_angle_1_deg4.677
r_scbond_it3.638
r_mcangle_it3.306
r_rigid_bond_restr2.702
r_mcbond_it1.869
r_angle_refined_deg1.552
r_angle_other_deg0.909
r_mcbond_other0.771
r_chiral_restr0.092
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_bond_other_d0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6956
Nucleic Acid Atoms
Solvent Atoms180
Heterogen Atoms48

Software

Software
Software NamePurpose
HKL-2000data collection
PHASERphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling