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Crystal structure of a putative deoxyribose-phosphate aldolase from Entamoeba histolytica
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 MD PACT SCREEN CONDITION C12: 100MM HEPES, PH 7.0, 20% PEG 6000, 10MM ZNCL2. ENHIA.01205.A AT 42.7MG/ML, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.21 44.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.26 α = 90 b = 70.78 β = 92.46 c = 126.75 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 98.9 0.086 13.1 4 97812 96738 13.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR, MR THROUGHOUT 1.7 47.38 96590 4829 98.8 0.147 0.146 0.175 0.1614 RANDOM 9.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.07 0.09 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.788 r_dihedral_angle_4_deg 19.047 r_dihedral_angle_3_deg 11.344 r_dihedral_angle_1_deg 6.272 r_scangle_it 3.62 r_scbond_it 2.119 r_angle_refined_deg 1.37 r_mcangle_it 1.135 r_angle_other_deg 0.915 r_mcbond_it 0.652
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.788 r_dihedral_angle_4_deg 19.047 r_dihedral_angle_3_deg 11.344 r_dihedral_angle_1_deg 6.272 r_scangle_it 3.62 r_scbond_it 2.119 r_angle_refined_deg 1.37 r_mcangle_it 1.135 r_angle_other_deg 0.915 r_mcbond_it 0.652 r_mcbond_other 0.215 r_chiral_restr 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6442 Nucleic Acid Atoms Solvent Atoms 1061 Heterogen Atoms 24
Software Software Software Name Purpose BOS data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling