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Archaeoglobus fulgidus aquaporin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F2B PDB Accession code 2F2B
Crystallization Crystal Properties Matthews coefficient Solvent content 3.38 63.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.899 α = 90 b = 199.861 β = 117.51 c = 90.567 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 210 monochrometer 2007-04-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 40 54.6 0.077 7.6 2.3 35301 35301
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.8 12.7 0.2 2.4 2.1 820
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Accession code 2F2B 3 39.07 33177 33177 1693 61.81 0.246 0.246 0.245 0.2534 0.274 0.2814 RANDOM 141.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 0.64 0.36 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.864 r_dihedral_angle_4_deg 25.91 r_dihedral_angle_3_deg 17.354 r_dihedral_angle_1_deg 5.03 r_angle_refined_deg 1.165 r_angle_other_deg 0.953 r_scangle_it 0.919 r_scbond_it 0.553 r_mcangle_it 0.392 r_mcbond_it 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.864 r_dihedral_angle_4_deg 25.91 r_dihedral_angle_3_deg 17.354 r_dihedral_angle_1_deg 5.03 r_angle_refined_deg 1.165 r_angle_other_deg 0.953 r_scangle_it 0.919 r_scbond_it 0.553 r_mcangle_it 0.392 r_mcbond_it 0.24 r_mcbond_other 0.08 r_chiral_restr 0.058 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14029 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 180
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction ELVES refinement