3NE1

Mycobacterium tuberculosis Acyl Carrier Protein Synthase in complex with sulfate ion


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION5.6% PEG 4K, 0.07 M sodium acetate pH 4.6 to 5.5, 50 mM ammonium sulfate, 30% glycerol., EVAPORATION
Crystal Properties
Matthews coefficientSolvent content
2.7354.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.123α = 90
b = 104.872β = 90
c = 105.196γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.513095.70.0313.81547115471

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.5120.071470476195.680.231110.227580.30123RANDOM74.144
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.35-3.535.89
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.855
r_scangle_it7.288
r_scbond_it4.678
r_mcangle_it4.125
r_angle_refined_deg3.348
r_mcbond_it2.393
r_angle_other_deg1.486
r_nbd_refined0.429
r_symmetry_vdw_other0.323
r_symmetry_vdw_refined0.311
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.855
r_scangle_it7.288
r_scbond_it4.678
r_mcangle_it4.125
r_angle_refined_deg3.348
r_mcbond_it2.393
r_angle_other_deg1.486
r_nbd_refined0.429
r_symmetry_vdw_other0.323
r_symmetry_vdw_refined0.311
r_nbd_other0.298
r_symmetry_hbond_refined0.286
r_chiral_restr0.22
r_xyhbond_nbd_refined0.207
r_nbtor_other0.158
r_bond_refined_d0.054
r_gen_planes_refined0.016
r_gen_planes_other0.015
r_bond_other_d0.008
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2910
Nucleic Acid Atoms
Solvent Atoms56
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
SCALEPACKdata scaling
CNSphasing