☰ Navigation Tabs
Activated Calcium-Dependent Protein Kinase 1 from Cryptosporidium parvum (CpCDPK1) in complex with bumped kinase inhibitor NM-PP1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MWU 3mwu, 3igo experimental model PDB 3IGO 3mwu, 3igo
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 32% PEG 3350, 0.35 M di-ammonium tartrate (not pH'ed), 5 mM TCEP, 3 mM MgCl2, 1 mM CaCl2, 2 mM inhibitor, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.37 48.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.991 α = 90 b = 55.968 β = 104.78 c = 81.972 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2009-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 35 95.3 0.092 8.1 3.7 17762 5 52.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.59 97.2 0.649 2.1 3.7 1775
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3mwu, 3igo 2.49 33.58 17724 907 94.82 0.253 0.25 0.2509 0.305 0.2974 RANDOM 58.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.75 0.64 -0.57 2.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.133 r_dihedral_angle_4_deg 18.018 r_dihedral_angle_3_deg 15.638 r_dihedral_angle_1_deg 5.672 r_scangle_it 4.361 r_scbond_it 2.906 r_mcangle_it 2.634 r_mcbond_it 1.555 r_angle_refined_deg 1.105 r_angle_other_deg 0.803
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.133 r_dihedral_angle_4_deg 18.018 r_dihedral_angle_3_deg 15.638 r_dihedral_angle_1_deg 5.672 r_scangle_it 4.361 r_scbond_it 2.906 r_mcangle_it 2.634 r_mcbond_it 1.555 r_angle_refined_deg 1.105 r_angle_other_deg 0.803 r_mcbond_other 0.342 r_chiral_restr 0.058 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3418 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing