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Crystal structure of a macrophage binding protein from Coccidioides immitis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RW7 PDB ENTRY 1rw7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 289 32.1 mg/mL protein against JCSG+ screen condition C6, 40% PEG 300, 0.1 M phosphate/citrate pH 4.2, crystal tracking ID 206576c6, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.93 68.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.41 α = 90 b = 89.41 β = 90 c = 107.01 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.97946 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 100 0.104 23.95 17.3 25961 -3 30.149
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.15 100 0.566 6.1 17.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1rw7 2.1 50 25849 1316 99.58 0.161 0.159 0.1615 0.192 0.1926 RANDOM 28.496
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 0.61 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.332 r_dihedral_angle_4_deg 19.107 r_dihedral_angle_3_deg 11.329 r_dihedral_angle_1_deg 6.406 r_scangle_it 4.318 r_scbond_it 2.58 r_mcangle_it 1.485 r_angle_refined_deg 1.4 r_mcbond_it 0.756 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.332 r_dihedral_angle_4_deg 19.107 r_dihedral_angle_3_deg 11.329 r_dihedral_angle_1_deg 6.406 r_scangle_it 4.318 r_scbond_it 2.58 r_mcangle_it 1.485 r_angle_refined_deg 1.4 r_mcbond_it 0.756 r_chiral_restr 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1845 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 12
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction