X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529310 mM Hepes, 30% PEG 2000 MME, 0.2 M Potassium thiocyanate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8433.16

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.709α = 90
b = 63.709β = 90
c = 61.722γ = 120
Symmetry
Space GroupP 31

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++2010-04-19MSINGLE WAVELENGTH
21x-ray100CCDRIGAKU SATURN A2002010-05-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.5418
2ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.775099.80.05912.85.6272992724521.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.771.896.80.5193.45.21318

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.77502590925855136899.790.1910.1910.1880.247RANDOM21.758
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.04-0.02-0.040.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.276
r_dihedral_angle_4_deg20.883
r_dihedral_angle_3_deg14.117
r_dihedral_angle_1_deg6.169
r_scangle_it5.024
r_scbond_it3.262
r_mcangle_it2.029
r_rigid_bond_restr1.569
r_angle_refined_deg1.32
r_mcbond_it1.165
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.276
r_dihedral_angle_4_deg20.883
r_dihedral_angle_3_deg14.117
r_dihedral_angle_1_deg6.169
r_scangle_it5.024
r_scbond_it3.262
r_mcangle_it2.029
r_rigid_bond_restr1.569
r_angle_refined_deg1.32
r_mcbond_it1.165
r_chiral_restr0.101
r_bond_refined_d0.012
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2393
Nucleic Acid Atoms
Solvent Atoms142
Heterogen Atoms3

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing
REFMACrefinement
PDB_EXTRACTdata extraction
SHELXDphasing