☰ Navigation Tabs
Crystal structure of human gamma-butyrobetaine hydroxylase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 298 0.1 M sodium acetate, 1.2 M ammonium sulfate, pH 4.5, vapour diffusion, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.1 69.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 164.8 α = 90 b = 164.8 β = 90 c = 97.78 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 1.00340, 0.97856, 0.91840 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 142.721 96.4 0.078 10.5 3.4 51166 29.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 82.3 0.477 0.477 1.5 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 142.72 48445 2586 96.1 0.21 0.208 0.2092 0.233 0.2329 RANDOM 30.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 -0.22 -0.43 0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.26 r_dihedral_angle_4_deg 16.779 r_dihedral_angle_3_deg 13.704 r_dihedral_angle_1_deg 5.912 r_scangle_it 3.069 r_scbond_it 1.772 r_mcangle_it 1.305 r_angle_refined_deg 1.156 r_mcbond_it 0.676 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.26 r_dihedral_angle_4_deg 16.779 r_dihedral_angle_3_deg 13.704 r_dihedral_angle_1_deg 5.912 r_scangle_it 3.069 r_scbond_it 1.772 r_mcangle_it 1.305 r_angle_refined_deg 1.156 r_mcbond_it 0.676 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2948 Nucleic Acid Atoms Solvent Atoms 197 Heterogen Atoms 26
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELX phasing SOLOMON phasing REFMAC refinement PDB_EXTRACT data extraction SHELXD phasing