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TM0449 mutant crystals grown in loops/micromounts
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O26 PDB entry 1O26
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.6 295 49% PEG 200, 0.1M HEPES (pH 7.6), grown in loops by a new method, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.15 42.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.523 α = 90 b = 116.754 β = 90 c = 141.053 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.9795 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 35.6 100 0.102 11.1 4.9 40897 40897
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 100 0.79 2 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Rigid body refinement THROUGHOUT PDB entry 1O26 2.3 30 38732 2046 99.84 0.20028 0.19764 0.1931 0.24884 0.2433 RANDOM 40.224
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.26 -0.8 -1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.019 r_dihedral_angle_4_deg 19.917 r_dihedral_angle_3_deg 16.485 r_dihedral_angle_1_deg 6.676 r_scangle_it 3.637 r_scbond_it 2.281 r_angle_refined_deg 1.843 r_mcangle_it 1.455 r_mcbond_it 0.781 r_chiral_restr 0.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.019 r_dihedral_angle_4_deg 19.917 r_dihedral_angle_3_deg 16.485 r_dihedral_angle_1_deg 6.676 r_scangle_it 3.637 r_scbond_it 2.281 r_angle_refined_deg 1.843 r_mcangle_it 1.455 r_mcbond_it 0.781 r_chiral_restr 0.252 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7133 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 292
Software Software Software Name Purpose Blu-Ice data collection REFMAC refinement MOSFLM data reduction SCALA data scaling