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Crystal structure of enoyl-coa hydratase mycobacterium smegmatis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VX2 pdb entry 2vx2 modified with CCP4 program chainsaw
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 290 EBS JCSG+ SCREEN D1: 24% PEG 1500, 20% GLYCEROL; MYSMA.00358.J AT MG/ML, PH N/A, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.45 α = 90 b = 78.45 β = 90 c = 113.43 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.9774 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 100 0.097 12.72 6.7 113405 113396 -3 22.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 100 0.513 3.6 6.8 8380
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2vx2 modified with CCP4 program chainsaw 1.55 43.54 113405 113349 5765 99.9 0.115 0.115 0.114 0.133 0.1547 RANDOM 12.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.04 2.04 -4.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.404 r_dihedral_angle_4_deg 16.196 r_dihedral_angle_3_deg 12.307 r_dihedral_angle_1_deg 4.922 r_scangle_it 3.604 r_scbond_it 2.227 r_angle_refined_deg 1.508 r_mcangle_it 1.365 r_angle_other_deg 0.99 r_mcbond_it 0.835
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.404 r_dihedral_angle_4_deg 16.196 r_dihedral_angle_3_deg 12.307 r_dihedral_angle_1_deg 4.922 r_scangle_it 3.604 r_scbond_it 2.227 r_angle_refined_deg 1.508 r_mcangle_it 1.365 r_angle_other_deg 0.99 r_mcbond_it 0.835 r_mcbond_other 0.275 r_chiral_restr 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5727 Nucleic Acid Atoms Solvent Atoms 938 Heterogen Atoms 24
Software Software Software Name Purpose BOS data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling