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Crystal structure of sensory box sensor histidine kinase from Vibrio cholerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 297 0.1M Bis-Tris, 1.2 M Na/K tartrate, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.56 52.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.237 α = 90 b = 102.202 β = 100.12 c = 124.969 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-06-11 M MAD 2 1 x-ray
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 19-ID 0.97956 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.78 50 99.8 0.102 43.5 9.3 18066 18036 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.85 99.7 0.754 2.67 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.78 50 17864 16965 900 98.9 0.22724 0.22547 0.2378 0.25743 0.2496 RANDOM 60.351
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.76 0.39 3.03 -5.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.249 r_dihedral_angle_3_deg 18.968 r_dihedral_angle_4_deg 18.739 r_dihedral_angle_1_deg 5.464 r_mcangle_it 4.071 r_scangle_it 3.683 r_mcbond_it 2.25 r_scbond_it 2.116 r_rigid_bond_restr 1.542 r_angle_refined_deg 1.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.249 r_dihedral_angle_3_deg 18.968 r_dihedral_angle_4_deg 18.739 r_dihedral_angle_1_deg 5.464 r_mcangle_it 4.071 r_scangle_it 3.683 r_mcbond_it 2.25 r_scbond_it 2.116 r_rigid_bond_restr 1.542 r_angle_refined_deg 1.218 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3773 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM model building RESOLVE model building Coot model building ARP/wARP model building CNS refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing