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Nucleoprotein structure of lassa fever virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 20% PEG3350, 0.2 M Lithium chloride, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.7 54.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 176.82 α = 90 b = 176.82 β = 90 c = 56.47 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2009-01-23 M SINGLE WAVELENGTH 2 1 x-ray 77 CCD ADSC QUANTUM 315 2009-01-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.978 Diamond I02 2 SYNCHROTRON DIAMOND BEAMLINE I02 1.84550,1.84470,1.30510 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.782 153.193 98 0.073 0.074 16.4 5.6 184629 184629 2 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.782 1.81 98 0.393 0.408 4.2 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.795 153.18 184629 174753 9253 99.71 0.17866 0.17773 0.1998 0.19638 0.2178 RANDOM 36.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 14.93 14.93 -29.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.771 r_dihedral_angle_4_deg 19.72 r_dihedral_angle_3_deg 13.272 r_scangle_it 6.094 r_dihedral_angle_1_deg 5.508 r_scbond_it 4.145 r_mcangle_it 2.568 r_mcbond_it 1.62 r_angle_refined_deg 1.395 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.771 r_dihedral_angle_4_deg 19.72 r_dihedral_angle_3_deg 13.272 r_scangle_it 6.094 r_dihedral_angle_1_deg 5.508 r_scbond_it 4.145 r_mcangle_it 2.568 r_mcbond_it 1.62 r_angle_refined_deg 1.395 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11993 Nucleic Acid Atoms Solvent Atoms 475 Heterogen Atoms 3
Software Software Software Name Purpose MOSFLM data reduction SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling