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Crystal structure of Staphylococcus aureus SirA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6.5 298 24% Polyethylene glycol 3350, 0.1M Bis-Tris, pH 6.5, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.33 47.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.136 α = 90 b = 61.513 β = 100.08 c = 114.649 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Sample to detector distance: 100 to 650 mm; Maximum vertical offset: 75mm 2010-02-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.97882, 0.97947 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 40 99.7 0.066 11.7 4.9 34267
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 100 0.414 3.6 4.9 3394
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 31.65 32066 1702 99.57 0.1941 0.19188 0.1911 0.23588 0.234 RANDOM 40.331
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 -0.09 0.01 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.876 r_dihedral_angle_3_deg 16.741 r_dihedral_angle_4_deg 15.5 r_dihedral_angle_1_deg 5.855 r_scangle_it 3.464 r_scbond_it 2.099 r_mcangle_it 1.313 r_angle_refined_deg 1.31 r_mcbond_it 0.701 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.876 r_dihedral_angle_3_deg 16.741 r_dihedral_angle_4_deg 15.5 r_dihedral_angle_1_deg 5.855 r_scangle_it 3.464 r_scbond_it 2.099 r_mcangle_it 1.313 r_angle_refined_deg 1.31 r_mcbond_it 0.701 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4351 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection