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Abl kinase in complex with imatinib and fragment (FRAG2) in the myristate site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IEP 1IEP.PDB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 277 Buffer: 0.1M imidazole pH 6.5, 0.2M MgCl2, 2%EG, 13.8% PEG4000, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.42 49.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.219 α = 90 b = 146.78 β = 127.07 c = 95.812 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 52.93 95.7 0.041 16.3 3.25 89303 89303 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.04 78.9 0.281 2.85 1.98 9031
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1IEP.PDB 1.95 52.93 84760 4461 96.64 0.17203 0.16949 0.175 0.2204 0.2259 RANDOM 28.453
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 -0.83 -0.42 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.221 r_dihedral_angle_4_deg 19.139 r_dihedral_angle_3_deg 15.672 r_dihedral_angle_1_deg 6.574 r_scangle_it 5.424 r_scbond_it 3.493 r_mcangle_it 2.216 r_angle_refined_deg 1.877 r_mcbond_it 1.254 r_chiral_restr 0.147
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.221 r_dihedral_angle_4_deg 19.139 r_dihedral_angle_3_deg 15.672 r_dihedral_angle_1_deg 6.574 r_scangle_it 5.424 r_scbond_it 3.493 r_mcangle_it 2.216 r_angle_refined_deg 1.877 r_mcbond_it 1.254 r_chiral_restr 0.147 r_bond_refined_d 0.024 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8604 Nucleic Acid Atoms Solvent Atoms 727 Heterogen Atoms 232
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling