☰ Navigation Tabs
Crystal structure of isoamyl acetate-hydrolyzing esterase from Saccharomyces cerevisiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.2 285 0.2M Ammonium fluoride, 20% (w/v) Polyethylene glycol 3350, pH 6.2, EVAPORATION, temperature 285K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.565 α = 90 b = 44.644 β = 114.44 c = 81.842 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate 2008-11-23 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MAR CCD 165 mm 2009-01-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5417 2 SYNCHROTRON BSRF BEAMLINE 3W1A 0.9792, 0.9795, 0.9000 BSRF 3W1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.6 50 90.9 0.041 17.7 4.8 56851 56851
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.6 1.63 83.2 0.283 3.4 2588
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 31.93 56831 56831 2885 90.92 0.19432 0.19303 0.187 0.21825 0.2134 RANDOM 17.987
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.47 0.3 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.759 r_dihedral_angle_4_deg 15.079 r_dihedral_angle_3_deg 12.252 r_dihedral_angle_1_deg 5.089 r_scangle_it 2.462 r_scbond_it 1.492 r_angle_refined_deg 1.099 r_mcangle_it 0.994 r_mcbond_it 0.536 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.759 r_dihedral_angle_4_deg 15.079 r_dihedral_angle_3_deg 12.252 r_dihedral_angle_1_deg 5.089 r_scangle_it 2.462 r_scbond_it 1.492 r_angle_refined_deg 1.099 r_mcangle_it 0.994 r_mcbond_it 0.536 r_chiral_restr 0.082 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3874 Nucleic Acid Atoms Solvent Atoms 623 Heterogen Atoms 12
Software Software Software Name Purpose MAR345dtb data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling