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Protein structure of Type III plasmid segregation TubR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 293 40 mM Na/K phosphate, 2.5 M NaCl, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.34 47.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.499 α = 90 b = 61.556 β = 112 c = 51.249 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r MIRROR 2008-10-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.95704,0.97966 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 49.81 100 0.068 0.068 21.9 7.5 17963 3 20.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 100 0.267 6.2 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 49.81 17045 917 100 0.24 0.238 0.2402 0.27 0.2688 RANDOM 24.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.99 0.81 -1.35 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.937 r_dihedral_angle_4_deg 17.989 r_dihedral_angle_3_deg 14.528 r_dihedral_angle_1_deg 4.231 r_scangle_it 1.753 r_scbond_it 1.231 r_angle_refined_deg 1.008 r_mcangle_it 0.674 r_mcbond_it 0.44 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.937 r_dihedral_angle_4_deg 17.989 r_dihedral_angle_3_deg 14.528 r_dihedral_angle_1_deg 4.231 r_scangle_it 1.753 r_scbond_it 1.231 r_angle_refined_deg 1.008 r_mcangle_it 0.674 r_mcbond_it 0.44 r_nbtor_refined 0.298 r_symmetry_hbond_refined 0.207 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.194 r_xyhbond_nbd_refined 0.127 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1524 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling