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Crystal structure of glutathione S-transferase from Pseudomonas fluorescens [Pf-5]
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 60%v/v Tacsimate pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298 K
Crystal Properties Matthews coefficient Solvent content 2.56 51.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.746 α = 90 b = 101.746 β = 90 c = 48.88 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2010-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.979 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 40.43 99.49 0.105 15.4 10 26280 24949 24.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.79 98.37 0.292 2.5 8.6 1785
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 40.43 26280 24949 1331 99.49 0.16049 0.15857 0.1604 0.19626 0.196 RANDOM 15.781
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.435 r_dihedral_angle_4_deg 13.455 r_dihedral_angle_3_deg 12.889 r_scangle_it 5.721 r_dihedral_angle_1_deg 5.383 r_scbond_it 3.651 r_mcangle_it 2.409 r_angle_refined_deg 2.22 r_mcbond_it 1.439 r_chiral_restr 0.173
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.435 r_dihedral_angle_4_deg 13.455 r_dihedral_angle_3_deg 12.889 r_scangle_it 5.721 r_dihedral_angle_1_deg 5.383 r_scbond_it 3.651 r_mcangle_it 2.409 r_angle_refined_deg 2.22 r_mcbond_it 1.439 r_chiral_restr 0.173 r_bond_refined_d 0.03 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1647 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 25
Software Software Software Name Purpose CBASS data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling