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Structural Insight into Methyl-Coenzyme M Reductase Chemistry using Coenzyme B Analogues
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 282 PEG 400, magnesium acetate, VAPOR DIFFUSION, SITTING DROP, temperature 282K
Crystal Properties Matthews coefficient Solvent content 2.18 43.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.016 α = 90 b = 118.26 β = 91.84 c = 122.387 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.90020 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 99.5 0.062 20.226 3.6 407511 405349 1 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 99.7 0.44 3.2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.45 20.15 410300 384868 20362 98.76 0.13609 0.1347 0.1336 0.16217 0.1607 RANDOM 13.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.7 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.093 r_dihedral_angle_4_deg 16.852 r_dihedral_angle_3_deg 13.468 r_dihedral_angle_1_deg 6.357 r_scangle_it 4.674 r_scbond_it 2.942 r_angle_refined_deg 2.468 r_mcangle_it 1.92 r_mcbond_it 1.275 r_chiral_restr 0.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.093 r_dihedral_angle_4_deg 16.852 r_dihedral_angle_3_deg 13.468 r_dihedral_angle_1_deg 6.357 r_scangle_it 4.674 r_scbond_it 2.942 r_angle_refined_deg 2.468 r_mcangle_it 1.92 r_mcbond_it 1.275 r_chiral_restr 0.196 r_bond_refined_d 0.032 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19098 Nucleic Acid Atoms Solvent Atoms 2462 Heterogen Atoms 232
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction BioCARS-developed data collection REFMAC phasing