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Padron0.9-ON (fluorescent state)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IOV PDB ENTRY 2IOV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.6 298 35% PEG 400, 5% PEG 3000, 0.1M Hepes, 10% glycerol, 0.1M spermidine, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.12 42.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.855 α = 90 b = 103.806 β = 90 c = 121.213 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.7 0.036 18.4 3.6 109915 110246 25.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 100 0.618 1.4 3.6 10889
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2IOV 1.65 20 104912 104188 5479 99.31 0.16946 0.16782 0.1832 0.19996 0.2166 RANDOM 20.686
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -1.93 2.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.589 r_dihedral_angle_4_deg 15.347 r_dihedral_angle_3_deg 13.65 r_dihedral_angle_1_deg 6.162 r_scangle_it 4.041 r_scbond_it 2.514 r_mcangle_it 1.471 r_angle_refined_deg 1.454 r_mcbond_it 0.783 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.589 r_dihedral_angle_4_deg 15.347 r_dihedral_angle_3_deg 13.65 r_dihedral_angle_1_deg 6.162 r_scangle_it 4.041 r_scbond_it 2.514 r_mcangle_it 1.471 r_angle_refined_deg 1.454 r_mcbond_it 0.783 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6997 Nucleic Acid Atoms Solvent Atoms 680 Heterogen Atoms 95
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling