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Crystal structure of putative isochorismatase hydrolase from Oleispira antarctica
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 295 PEG 3350 25%, NaCl 0.2M, Na citrate 0.1M pH 5.6, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.09 41.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.59 α = 90 b = 41.59 β = 90 c = 171.198 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2009-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 98.8 0.09 0.09 48.5 8.7 18174 18174 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 91.3 0.54 0.54 2.5 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 50 17118 17118 921 98.83 0.21321 0.21171 0.2149 0.24282 0.2443 RANDOM 49.335
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 0.06 0.13 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.094 r_dihedral_angle_4_deg 22.808 r_dihedral_angle_3_deg 13.676 r_dihedral_angle_1_deg 5.955 r_angle_other_deg 4.395 r_scangle_it 3.658 r_scbond_it 2.91 r_mcangle_it 1.598 r_angle_refined_deg 1.55 r_mcbond_it 0.995
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.094 r_dihedral_angle_4_deg 22.808 r_dihedral_angle_3_deg 13.676 r_dihedral_angle_1_deg 5.955 r_angle_other_deg 4.395 r_scangle_it 3.658 r_scbond_it 2.91 r_mcangle_it 1.598 r_angle_refined_deg 1.55 r_mcbond_it 0.995 r_chiral_restr 0.089 r_bond_refined_d 0.016 r_gen_planes_other 0.011 r_gen_planes_refined 0.008 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1396 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 6
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM model building SOLVE phasing RESOLVE model building CCP4 model building ARP/wARP model building REFMAC refinement Coot model building HKL-2000 data reduction HKL-2000 data scaling DM phasing RESOLVE phasing CCP4 phasing