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HIV-1 reverse transcriptase with inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 6.8 298 0.1 M Sodium cacodylate pH 6.8, 0.8 M Sodium Citrate, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.07 59.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.784 α = 90 b = 155.264 β = 90 c = 155.244 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC/MAR SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.23 50 96.3 0.049 15.2 5.1 67667
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.23 2.31 97.2 0.251 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.23 50 64255 3410 96.17 0.26906 0.26782 0.2653 0.29217 0.2901 RANDOM 44.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 -0.95 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.526 r_dihedral_angle_3_deg 15.856 r_dihedral_angle_4_deg 14.085 r_dihedral_angle_1_deg 4.901 r_angle_refined_deg 0.962 r_scangle_it 0.822 r_mcangle_it 0.628 r_scbond_it 0.49 r_mcbond_it 0.353 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.526 r_dihedral_angle_3_deg 15.856 r_dihedral_angle_4_deg 14.085 r_dihedral_angle_1_deg 4.901 r_angle_refined_deg 0.962 r_scangle_it 0.822 r_mcangle_it 0.628 r_scbond_it 0.49 r_mcbond_it 0.353 r_nbtor_refined 0.298 r_nbd_refined 0.168 r_symmetry_vdw_refined 0.148 r_xyhbond_nbd_refined 0.106 r_symmetry_hbond_refined 0.086 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7814 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 40
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction