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HIV-1 reverse transcriptase with inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting drop 6.8 298 0.1 M Sodium cacodylate pH 6.8, 0.8 M Sodium Citrate, sitting drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3 58.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.299 α = 90 b = 154.184 β = 90 c = 153.168 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC/MAR SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.79 50 91.8 0.043 17.5 3.6 32379
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.79 2.9 83.4 0.43 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.79 50 30644 1618 91.67 0.2509 0.24775 0.2437 0.30984 0.3023 RANDOM 76.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.77 -1.58 3.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.977 r_dihedral_angle_3_deg 18.128 r_dihedral_angle_4_deg 14.209 r_dihedral_angle_1_deg 5.422 r_angle_refined_deg 1.046 r_scangle_it 0.946 r_mcangle_it 0.683 r_scbond_it 0.546 r_mcbond_it 0.378 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.977 r_dihedral_angle_3_deg 18.128 r_dihedral_angle_4_deg 14.209 r_dihedral_angle_1_deg 5.422 r_angle_refined_deg 1.046 r_scangle_it 0.946 r_mcangle_it 0.683 r_scbond_it 0.546 r_mcbond_it 0.378 r_nbtor_refined 0.303 r_nbd_refined 0.192 r_symmetry_vdw_refined 0.144 r_symmetry_hbond_refined 0.13 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7821 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 40
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction