☰ Navigation Tabs
Crystal structure of Putative kinase. (17743352) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 1.70 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.3 277 20.0000% polyethylene glycol 3350, 0.2000M calcium acetate, No Buffer pH 7.3, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.907 α = 97.98 b = 49.598 β = 104.64 c = 57.328 γ = 109.97
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-11-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.96109,0.97949,0.97936 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.13 85.7 0.06 6.16 48619 -3 25.125
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 77.9 0.151 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.13 48619 2471 94.54 0.161 0.16 0.2061 0.186 0.2274 RANDOM 18.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.76 2 0.41 3.65 1.28 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.628 r_dihedral_angle_4_deg 14.399 r_dihedral_angle_3_deg 13.484 r_dihedral_angle_1_deg 5.576 r_scangle_it 3.591 r_scbond_it 2.243 r_angle_refined_deg 1.483 r_mcangle_it 1.43 r_angle_other_deg 0.938 r_mcbond_it 0.827
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.628 r_dihedral_angle_4_deg 14.399 r_dihedral_angle_3_deg 13.484 r_dihedral_angle_1_deg 5.576 r_scangle_it 3.591 r_scbond_it 2.243 r_angle_refined_deg 1.483 r_mcangle_it 1.43 r_angle_other_deg 0.938 r_mcbond_it 0.827 r_mcbond_other 0.239 r_chiral_restr 0.091 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3358 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing