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crystal structure of htlv protease complexed with the inhibitor KNI-10729
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2B7F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 293 17%PEG8000 16% PEG300 0.01M BaCl
10mM DTT, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.74 55.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.376 α = 90 b = 77.376 β = 90 c = 159.327 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2008-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 89.4 0.101 14.6 5.3 7455 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 59.4 0.28 2.7 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2B7F 2.7 50 7237 214 89.68 0.20764 0.20559 0.1988 0.28165 0.2751 RANDOM 35.229
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.15 -2.07 -4.15 6.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.963 r_dihedral_angle_3_deg 19.854 r_dihedral_angle_4_deg 12.387 r_scangle_it 6.863 r_mcangle_it 6.368 r_dihedral_angle_1_deg 5.993 r_scbond_it 4.503 r_mcbond_it 4.016 r_angle_refined_deg 1.548 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.963 r_dihedral_angle_3_deg 19.854 r_dihedral_angle_4_deg 12.387 r_scangle_it 6.863 r_mcangle_it 6.368 r_dihedral_angle_1_deg 5.993 r_scbond_it 4.503 r_mcbond_it 4.016 r_angle_refined_deg 1.548 r_chiral_restr 0.098 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1766 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 57
Software Software Software Name Purpose MAR345 data collection PHASER phasing REFMAC refinement HKL-3000 data reduction SCALEPACK data scaling