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Crystal structure of HSC70/BAG1 in complex with small molecule inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HX1 pdb entry 1HX1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 15% PEG3350, 0.1M TRIS BUFFER, 25MM SODIUM-POTASSIUM TARTRATE, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.34 47.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.774 α = 90 b = 121.995 β = 106.88 c = 54.25 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2009-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9724 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 97.7 0.055 21 3.5 39034 39034
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 95.4 0.193 6 2.9 3805
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1HX1 1.9 10 36900 1955 98.08 0.2058 0.20314 0.2024 0.25597 0.2547 RANDOM 29.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.18 -0.98 -0.66 1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.211 r_dihedral_angle_3_deg 16.069 r_dihedral_angle_4_deg 15.807 r_dihedral_angle_1_deg 5.405 r_scangle_it 4.346 r_scbond_it 2.759 r_mcangle_it 1.657 r_angle_refined_deg 1.489 r_mcbond_it 1.053 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.211 r_dihedral_angle_3_deg 16.069 r_dihedral_angle_4_deg 15.807 r_dihedral_angle_1_deg 5.405 r_scangle_it 4.346 r_scbond_it 2.759 r_mcangle_it 1.657 r_angle_refined_deg 1.489 r_mcbond_it 1.053 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.198 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.106 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3790 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 31
Software Software Software Name Purpose MxCuBE data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling