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Alpha-Helical barrel formed by the decamer of the zinc resistance-associated protein (STM4172) from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 0.2 M Sodium chloride, 0.1 M Bis-tris, 25 % (w/v) PEG 3350, 0.2 mM Zn acetate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.795 α = 90 b = 148.91 β = 90 c = 74.536 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD beryllium lenses 2009-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97872 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 83.33 99.9 0.07 40.9 7.3 31571 31571 -3 65.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 100 0.48 3.9 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACMENT THROUGHOUT 2.7 30 31571 29891 1586 99.71 0.22486 0.22263 0.2319 0.2672 0.2758 RANDOM 29.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 1.63 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.365 r_dihedral_angle_4_deg 18.532 r_dihedral_angle_3_deg 15.526 r_scangle_it 5.908 r_scbond_it 3.564 r_mcangle_it 2.657 r_dihedral_angle_1_deg 2.602 r_angle_refined_deg 1.622 r_mcbond_it 1.417 r_angle_other_deg 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.365 r_dihedral_angle_4_deg 18.532 r_dihedral_angle_3_deg 15.526 r_scangle_it 5.908 r_scbond_it 3.564 r_mcangle_it 2.657 r_dihedral_angle_1_deg 2.602 r_angle_refined_deg 1.622 r_mcbond_it 1.417 r_angle_other_deg 0.92 r_mcbond_other 0.259 r_chiral_restr 0.09 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5936 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection MLPHARE phasing DM model building SHELXD phasing RESOLVE model building CCP4 model building ARP/wARP model building Coot model building REFMAC refinement HKL-2000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing CCP4 phasing