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Structure of the C-terminal domain from a Streptococcus mutans hypothetical
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 0.1M Hepes ph7.5, 0.2M Ammonium Sulfate, 25% PEG3350, 1/10 Papain. Cryoprotected with crystallization solution plus 8% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.98 37.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.08 α = 90 b = 64.08 β = 90 c = 39.975 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2009-10-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97915, 0.97942 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 23.29 90.9 0.038 59.333 6.7 22544 20493 -3 9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.25 1.27 49.9 0.113 10.5 2.8 567
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT none 1.3 23.29 19106 990 95.31 0.13462 0.13354 0.1302 0.1549 0.1516 RANDOM 9.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.839 r_dihedral_angle_4_deg 34.183 r_dihedral_angle_3_deg 10.213 r_dihedral_angle_1_deg 6.382 r_sphericity_free 3.753 r_scangle_it 2.635 r_sphericity_bonded 2.008 r_scbond_it 1.968 r_rigid_bond_restr 1.586 r_mcangle_it 1.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.839 r_dihedral_angle_4_deg 34.183 r_dihedral_angle_3_deg 10.213 r_dihedral_angle_1_deg 6.382 r_sphericity_free 3.753 r_scangle_it 2.635 r_sphericity_bonded 2.008 r_scbond_it 1.968 r_rigid_bond_restr 1.586 r_mcangle_it 1.299 r_angle_refined_deg 1.16 r_mcbond_it 0.798 r_nbtor_refined 0.322 r_nbd_refined 0.24 r_symmetry_vdw_refined 0.208 r_symmetry_hbond_refined 0.162 r_xyhbond_nbd_refined 0.114 r_chiral_restr 0.087 r_metal_ion_refined 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 743 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 19
Software Software Software Name Purpose HKL-3000 data collection SHELXCD phasing SHELXE model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling