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Crystal structure of Putative sugar phosphate isomerase (AFE_0303) from Acidithiobacillus ferrooxidans ATCC 23270 at 1.85 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 277 0.2000M sodium chloride, 20.0000% polyethylene glycol 8000, 0.1M CAPS pH 10.5, 0.001 M alpha-ketoglutaric acid, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.34 63.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.876 α = 90 b = 93.744 β = 90 c = 139.042 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-07-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97925,0.97876 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 29.488 96.3 0.062 10.11 84481 -3 24.678
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 95.3 0.729 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 29.488 84428 4216 99 0.181 0.18 0.1879 0.21 0.2142 RANDOM 21.563
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 0.87 -1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.933 r_dihedral_angle_4_deg 14.784 r_dihedral_angle_3_deg 12.93 r_dihedral_angle_1_deg 5.75 r_angle_refined_deg 1.707 r_scangle_it 1.694 r_mcangle_it 1.587 r_scbond_it 1.087 r_mcbond_it 0.939 r_angle_other_deg 0.844
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.933 r_dihedral_angle_4_deg 14.784 r_dihedral_angle_3_deg 12.93 r_dihedral_angle_1_deg 5.75 r_angle_refined_deg 1.707 r_scangle_it 1.694 r_mcangle_it 1.587 r_scbond_it 1.087 r_mcbond_it 0.939 r_angle_other_deg 0.844 r_mcbond_other 0.21 r_chiral_restr 0.07 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4965 Nucleic Acid Atoms Solvent Atoms 732 Heterogen Atoms 115
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing