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Crystal structure of Zaire Ebola VP35 interferon inhibitory domain R312A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FKE PDB ENTRY 3FKE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.15 293 1.85 M SODIUM PHOSPHATE, 0.15 M POTASSIUM PHOSPHATE, pH 4.15, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.92 57.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.549 α = 90 b = 81.549 β = 90 c = 343.493 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.6 0.092 27 11.4 50802 50802 19.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 100 2.3 10.7 2481
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FKE 1.95 40.79 50802 43621 2348 90.78 0.17884 0.17884 0.17619 0.191 0.22893 0.2342 RANDOM 14.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.02 -0.05 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.263 r_dihedral_angle_4_deg 24.317 r_dihedral_angle_3_deg 14.509 r_dihedral_angle_1_deg 5.134 r_scangle_it 3.868 r_scbond_it 2.412 r_angle_refined_deg 1.443 r_mcangle_it 1.273 r_mcbond_it 0.754 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.263 r_dihedral_angle_4_deg 24.317 r_dihedral_angle_3_deg 14.509 r_dihedral_angle_1_deg 5.134 r_scangle_it 3.868 r_scbond_it 2.412 r_angle_refined_deg 1.443 r_mcangle_it 1.273 r_mcbond_it 0.754 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.296 r_symmetry_metal_ion_refined 0.222 r_nbd_refined 0.217 r_metal_ion_refined 0.212 r_xyhbond_nbd_refined 0.173 r_symmetry_hbond_refined 0.164 r_chiral_restr 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3817 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms 114
Software Software Software Name Purpose HKL-3000 data collection PHASER phasing REFMAC refinement HKL-3000 data reduction SCALEPACK data scaling