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Crystal structure of Mp1p ligand binding domain 2 complexd with palmitic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 289 11% polyethylene glycol(PEG)8000, 0.1M HEPES(pH 7.5), 8% ethylene glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.9 35.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.51 α = 90 b = 46.51 β = 90 c = 149.38 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.97894 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 19.74 98 0.079 20.2 41553 40950
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.35 95 0.383 5.5 16.2 4048
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 1.3 19.74 40950 37257 1979 90 0.18456 0.18242 0.18162 0.19755 0.1977 RANDOM 14.547
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.05 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.097 r_dihedral_angle_3_deg 11.639 r_dihedral_angle_4_deg 7.429 r_dihedral_angle_1_deg 3.764 r_scangle_it 3.009 r_scbond_it 2.102 r_mcangle_it 1.278 r_angle_refined_deg 1.043 r_mcbond_it 0.919 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.097 r_dihedral_angle_3_deg 11.639 r_dihedral_angle_4_deg 7.429 r_dihedral_angle_1_deg 3.764 r_scangle_it 3.009 r_scbond_it 2.102 r_mcangle_it 1.278 r_angle_refined_deg 1.043 r_mcbond_it 0.919 r_nbtor_refined 0.299 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.183 r_xyhbond_nbd_refined 0.1 r_symmetry_hbond_refined 0.092 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1171 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 18
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling