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Crystal structure of Protein of unknown function (NP_812423.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.8 277 3.0000M ammonium sulfate, 0.1M MES pH 5.8, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.05 39.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.698 α = 90 b = 46.261 β = 90 c = 130.533 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-06-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97916 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 28.56 99.9 0.108 0.108 9.2 3.4 16114 30.795
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 100 0.629 0.629 1.2 3.5 1131
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 28.56 16067 805 99.89 0.224 0.222 0.2343 0.268 0.2812 RANDOM 18.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 1.62 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.422 r_dihedral_angle_3_deg 12.491 r_dihedral_angle_4_deg 10.635 r_dihedral_angle_1_deg 4.127 r_scangle_it 1.344 r_angle_refined_deg 1.289 r_angle_other_deg 1.188 r_scbond_it 0.856 r_mcangle_it 0.526 r_mcbond_it 0.282
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.422 r_dihedral_angle_3_deg 12.491 r_dihedral_angle_4_deg 10.635 r_dihedral_angle_1_deg 4.127 r_scangle_it 1.344 r_angle_refined_deg 1.289 r_angle_other_deg 1.188 r_scbond_it 0.856 r_mcangle_it 0.526 r_mcbond_it 0.282 r_chiral_restr 0.1 r_mcbond_other 0.057 r_bond_refined_d 0.017 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2044 Nucleic Acid Atoms Solvent Atoms 118 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing