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human DPP-IV with carmegliptin (S)-1-((2S,3S,11bS)-2-Amino-9,10-dimethoxy-1,3,4,6,7,11b-hexahydro-2H-pyrido[2,1-a]isoquinolin-3-yl)-4-fluoromethyl-pyrrolidin-2-one
Crystallization Crystal Properties Matthews coefficient Solvent content 2.86 56.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.626 α = 90 b = 69.541 β = 90 c = 423.039 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 15 88.01 64224 64224
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 15 64224 64224 3403 88.01 0.20214 0.19976 0.2463 0.296 RANDOM 40.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 4.41 -2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.255 r_dihedral_angle_4_deg 17.992 r_dihedral_angle_3_deg 17.924 r_dihedral_angle_1_deg 6.584 r_scangle_it 1.98 r_angle_refined_deg 1.301 r_scbond_it 1.241 r_mcangle_it 1.028 r_mcbond_it 0.587 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.255 r_dihedral_angle_4_deg 17.992 r_dihedral_angle_3_deg 17.924 r_dihedral_angle_1_deg 6.584 r_scangle_it 1.98 r_angle_refined_deg 1.301 r_scbond_it 1.241 r_mcangle_it 1.028 r_mcbond_it 0.587 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.269 r_symmetry_hbond_refined 0.264 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.096 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11926 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms 110
Software Software Software Name Purpose HKL-2000 data collection REFMAC refinement SCALEPACK data scaling