3KWE

Inactive truncation of the beta-carboxysomal gamma-Carbonic Anhydrase, CcmM, form 2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.62930.01M cobalt (II) chloride, 0.1M sodium acetate, 1.0 M 1,6-hexanediol, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9837.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.931α = 90
b = 102.931β = 90
c = 44.903γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-03-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.91840APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.14091.40.0669.75.765832-3-39.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.1264.20.2944.12.22304

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3KWD1.126.95-999-9996230062300329691.090.129940.129440.12890.13947RANDOM11.452
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.07-0.04-0.070.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.729
r_dihedral_angle_4_deg13.336
r_dihedral_angle_3_deg11.705
r_dihedral_angle_1_deg6.583
r_scangle_it1.615
r_angle_refined_deg1.411
r_scbond_it1.154
r_angle_other_deg0.866
r_mcangle_it0.682
r_mcbond_it0.568
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.729
r_dihedral_angle_4_deg13.336
r_dihedral_angle_3_deg11.705
r_dihedral_angle_1_deg6.583
r_scangle_it1.615
r_angle_refined_deg1.411
r_scbond_it1.154
r_angle_other_deg0.866
r_mcangle_it0.682
r_mcbond_it0.568
r_symmetry_vdw_other0.306
r_nbd_refined0.208
r_nbd_other0.196
r_symmetry_vdw_refined0.193
r_nbtor_refined0.174
r_mcbond_other0.126
r_symmetry_hbond_refined0.107
r_xyhbond_nbd_refined0.103
r_chiral_restr0.084
r_nbtor_other0.08
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1266
Nucleic Acid Atoms
Solvent Atoms193
Heterogen Atoms12

Software

Software
Software NamePurpose
ADSCdata collection
MOLREPphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling