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CRYSTAL STRUCTURE OF GLYCEROL UPTAKE OPERON ANTITERMINATOR REGULATORY PROTEIN FROM LISTERIA MONOCYTOGENES STR. 4b F2365
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 294 0.15M DL MALIC ACID PH 7, 20% PEG3350, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.64 53.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.603 α = 90 b = 110.599 β = 116.44 c = 130.971 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 315 MIRRORS 2009-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 40 99.7 0.64 6.6 2.1 45680 -5 98.618
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.85 99.9 0.92 0.7 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.75 20 43659 1405 98.99 0.21964 0.21786 0.2222 0.2715 0.2729 RANDOM 99.503
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 0.86 -0.23 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.194 r_dihedral_angle_4_deg 25.872 r_dihedral_angle_3_deg 20.512 r_scangle_it 13.343 r_scbond_it 9.312 r_mcangle_it 6.121 r_dihedral_angle_1_deg 5.869 r_mcbond_it 3.917 r_angle_refined_deg 1.22 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.194 r_dihedral_angle_4_deg 25.872 r_dihedral_angle_3_deg 20.512 r_scangle_it 13.343 r_scbond_it 9.312 r_mcangle_it 6.121 r_dihedral_angle_1_deg 5.869 r_mcbond_it 3.917 r_angle_refined_deg 1.22 r_nbtor_refined 0.297 r_xyhbond_nbd_refined 0.14 r_nbd_refined 0.131 r_symmetry_hbond_refined 0.129 r_symmetry_vdw_refined 0.117 r_chiral_restr 0.086 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11354 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 80
Software Software Software Name Purpose SHELX model building PHENIX model building RESOLVE model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing PHENIX phasing RESOLVE phasing