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CRYSTAL STRUCTURE OF A PUTATIVE PREPHENATE DEHYDROGENASE (CGL0226) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 AT 2.60 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 10.0000% polyethylene glycol 6000, 1.0000M lithium chloride, 0.1M citric acid pH 4.0, Additive: 0.001 M Nicotinamide-adenine-dinucleotide (NAD), NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.66 53.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.322 α = 90 b = 107.23 β = 90 c = 146.915 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-07-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97947,0.97883 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 29.527 99.9 0.108 0.108 11.6 4.1 48978 58.039
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67 100 0.775 0.775 1.9 4.2 3564
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 29.527 48915 2475 99.9 0.215 0.213 0.2217 0.254 0.2602 RANDOM 38.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.68 -0.79 -3.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.6 r_dihedral_angle_3_deg 12.412 r_dihedral_angle_4_deg 12.08 r_dihedral_angle_1_deg 3.5 r_scangle_it 3.173 r_scbond_it 2.03 r_mcangle_it 1.146 r_angle_refined_deg 1.119 r_angle_other_deg 0.956 r_mcbond_it 0.561
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.6 r_dihedral_angle_3_deg 12.412 r_dihedral_angle_4_deg 12.08 r_dihedral_angle_1_deg 3.5 r_scangle_it 3.173 r_scbond_it 2.03 r_mcangle_it 1.146 r_angle_refined_deg 1.119 r_angle_other_deg 0.956 r_mcbond_it 0.561 r_mcbond_other 0.077 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9443 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction