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Crystal structure of Putative aminotransferase (AAH25799.1) from MUS MUSCULUS at 1.80 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KGW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 293 20.0000% polyethylene glycol 3350, 0.2000M ammonium fluoride, No Buffer pH 6.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 47.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.391 α = 90 b = 112.565 β = 90 c = 117.351 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.696 99.9 0.082 0.082 10.7 3.5 76087 22.063
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 100 0.684 0.684 1.1 3.6 5584
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 3KGW 1.8 29.696 76018 3820 99.9 0.175 0.173 0.1961 0.207 0.2265 RANDOM 20.981
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.91 1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.872 r_dihedral_angle_4_deg 13.417 r_dihedral_angle_3_deg 11.04 r_dihedral_angle_1_deg 3.981 r_scangle_it 3.298 r_scbond_it 2.038 r_angle_refined_deg 1.832 r_angle_other_deg 1.35 r_mcangle_it 1.326 r_mcbond_it 0.723
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.872 r_dihedral_angle_4_deg 13.417 r_dihedral_angle_3_deg 11.04 r_dihedral_angle_1_deg 3.981 r_scangle_it 3.298 r_scbond_it 2.038 r_angle_refined_deg 1.832 r_angle_other_deg 1.35 r_mcangle_it 1.326 r_mcbond_it 0.723 r_mcbond_other 0.183 r_chiral_restr 0.103 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5953 Nucleic Acid Atoms Solvent Atoms 502 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement PHENIX refinement MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing