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Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-(methoxycarbonyl)glycine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 PEG 4000, Ammonium and magnesium acetate, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.07 40.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.754 α = 90 b = 64.754 β = 90 c = 123.664 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1000 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99 0.079 0.079 17.6 3.5 13931
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 99.7 0.429 2.8 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.7 50 13908 691 99.05 0.256 0.253 0.2511 0.316 0.3172 RANDOM 57.948
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.49 2.49 -4.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.131 r_dihedral_angle_3_deg 17.856 r_dihedral_angle_4_deg 9.335 r_dihedral_angle_1_deg 5.89 r_scangle_it 1.541 r_angle_refined_deg 1.169 r_mcangle_it 0.99 r_scbond_it 0.944 r_mcbond_it 0.562 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.131 r_dihedral_angle_3_deg 17.856 r_dihedral_angle_4_deg 9.335 r_dihedral_angle_1_deg 5.89 r_scangle_it 1.541 r_angle_refined_deg 1.169 r_mcangle_it 0.99 r_scbond_it 0.944 r_mcbond_it 0.562 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.234 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.082 r_symmetry_hbond_refined 0.059 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4181 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing