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Frog M-ferritin with magnesium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 2M MgCl2, 0.1M Bicine pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.14 60.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.886 α = 90 b = 183.886 β = 90 c = 183.886 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Mirror 1: plane parabola Pt and Rh-coated Invar steel. Mirror 2: torroid Pt and Rh-coated Si M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 100 0.088 0.088 21.2 13.6 52741
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.48 100 0.969 0.969 0.8 13.7 7566
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 50 52741 2689 99.99 0.137 0.136 0.138 0.159 0.1588 RANDOM 16.983
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.192 r_dihedral_angle_4_deg 15.94 r_sphericity_free 15.282 r_dihedral_angle_3_deg 14.292 r_scangle_it 7.613 r_scbond_it 5.375 r_dihedral_angle_1_deg 4.754 r_sphericity_bonded 4.74 r_mcangle_it 3.026 r_rigid_bond_restr 2.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.192 r_dihedral_angle_4_deg 15.94 r_sphericity_free 15.282 r_dihedral_angle_3_deg 14.292 r_scangle_it 7.613 r_scbond_it 5.375 r_dihedral_angle_1_deg 4.754 r_sphericity_bonded 4.74 r_mcangle_it 3.026 r_rigid_bond_restr 2.7 r_mcbond_it 2.243 r_angle_refined_deg 2.141 r_angle_other_deg 1.724 r_mcbond_other 0.964 r_chiral_restr 0.137 r_bond_refined_d 0.028 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1429 Nucleic Acid Atoms Solvent Atoms 292 Heterogen Atoms 17
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection PHASER phasing